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GSJ: Received Apr. 16, 2007: http://wbabin.net/saba/saba72.htm

Discovery of Modulators of Polymerization

James Saba

A new an apparently significant advance in DNA sequencing is pyrosequencing using microspheres and a fiber-optic picotiter plate (1,2,3).

It has been recognized, and claimed herein, that the this technology is perfectly suited to identify ligands which alter the functioning of polymerases (such as HIV reverse transcriptase) and other proteins involved in nucleic acid polymerization.

Figure 1 delineates the process, identifying inhibitors.

Various means of encoding beads (including microspheres) are well known, as are methods of synthesizing libraries of compounds on such beads. Alternatively to encoding the bead, a library member could be directly identified such as by mass spectrometry.

The molecular library attached to such beads could be of any class, such as small organics, peptides, or oligonucleotides. Library may be optionally dissociated from the beads by incorporation of an appropriate linker.

Notice that activators as well as inhibitors could be identified, and that allosteric modulators of known activators or inhibitors could be identified.

If it should be that the above invention is indeed novel any patentable rights I may have, I freely give away.

It is hoped that others will honor the invention as delineated above and by the following claims.

Claims

1) A process of identifying a molecule which modulates the activity of a polymerase or other protein involved in nucleic acid polymerization, wherein the released pyrophosphate is a source of signal identifying polymerization.

2) The process of claim 1 which also makes use of a bead-based library of molecules.

3) The process of claim 2 wherein the library of molecules is cleaved from the beads.

4) A process of protein ligand discovery using a fiber-optic picotiter plate.

5) The process of any of the above where the polymerase is of viral, fungal, or bacterial origin.

6) The process of claim 5 where the polymerase is from a virus.

References

1) Pyrosequencing using fiber-optic picotiter plates.

2) Sequencing by synthesis based ordered restriction mapping.
Fuerst, et al US Patent Appl 20070082358 April 12, 2007

3) Nucleic acid sequencing using microsphere arrays.
Chee, et al US Patent Appl 20050191698 September 1, 2005

For a complete list of articles published by James Saba in the Gen Sci J, please go to http://www.wbabin.net/saba.htm